you need to loomon top of the piston thats in it and it will have a oversize stamp on it if its not standard,for instance a barrel that has been ebored to 0.50 mm will have the .50 mark stamped on the top of the piston.i think the standard size for a yamaha is 40mm but ill check and let you know,the correct place to measure a piston is at the bottom of it and from the back to the front as a piston is in fact oval and not completley round and aslo a piston is tapered its bigger at the bottom that it is a the top i know as i can operate a boring bar and have done thousands of rebores over the years.
adam bike doctor(of milton keynes motorcycle centre), December 2010