i would say you have pulled the vaccum hose off the fuel tap or off the carb and the bike is literally runnning on fumes,you may have extended the pivot of the engine to frame more than it usually moves as the rear shock was out whcih may have tugged on the pipe.check the fuel tap it will have two hoses on it the bottom one is the vaccum hose and the one on the side is the fuel hose
adam bike doctor(of milton keynes motorcycle centre), January 2011